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      Single Cell RNA-Seq Analysis

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Discussion and Lectures
Intro to the Workshop
What is Bioinformatics/Genomics?
Experimental Design and Cost Estimation
Closing thoughts
Data Reduction
Files and Filetypes
Generating Expression Matrix
Prerequisites
CLI
R
Data analysis
Prepare scRNAseq Analysis
Part 1- Create object
Part 2- Filtering
Part 3- Normalization
Part 4- Dimensionality reduction
Part 6- Enrichment and DE
Support
Cheat Sheets
Software and Links
Scripts
ETC
CAT website
Github page
Report Errors

Links to Scripts

Templates

HTStream Preprocessing